Hail Discussion

Topic	Replies	Views	Activity
I cannot access the VEP, Annotation DB, or Datasets API buckets Hail Query & hailctl Due to changes in the price of transferring data from a Google Cloud Storage multi-regional bucket to a regional bucket, we had to move our VEP reference data, Annotation DB datasets, and Datasets API datasets, into regi…	1	169	February 28, 2024
Welcome to the Hail community! Updates	0	3886	August 26, 2016
Most efficient way to filter and densify VDS Hail Query & hailctl	0	13	April 24, 2024
IllegalArgumentException Hail Query & hailctl	0	11	April 24, 2024
Are 0/0 genotypes counted as defined in hl.is_defined(mt.GT)? And are NA genotypes counted as missing in hl.is_missing(mt.GT)? Hail Query & hailctl	0	19	April 22, 2024
UK Biobank RAP - Generating Summary File from Variant QC Hail Query & hailctl	2	43	April 20, 2024
Aggregating a numeric array Hail Query & hailctl	2	145	April 11, 2024
Distributing import_vcf and multi_way_union_mts across Spark workers Hail Query & hailctl	0	34	April 11, 2024
Outputting sample IDs for multi allelic sites Hail Query & hailctl	5	89	April 10, 2024
Error in load_dataset() Hail Query & hailctl	3	34	April 10, 2024
Trinucleotide Count Hail Query & hailctl	0	50	April 1, 2024
Hail Tutorial Error Hail Query & hailctl	0	53	March 31, 2024
Unable to write matrix tables to MinIO S3 storage Hail Batch & General Cloud	1	63	March 29, 2024
Unable to connect to Jupyter notebook Hail Query & hailctl	2	111	March 27, 2024
Is there a more computationally efficient way to get a single variant from VDS? Hail Query & hailctl	3	88	March 27, 2024
REF ALT miss-matching after split multi-allelic lines Hail Query & hailctl	4	83	March 27, 2024
Understanding how hwe_normalized_pca works Hail Query & hailctl	2	101	March 26, 2024
NA causes export errors out Hail Query & hailctl	4	80	March 26, 2024
Write compressed Tables/Matrices Hail Query & hailctl	1	71	March 25, 2024
Best practices for setting up GCP billing for Hail for the first time Hail Batch & General Cloud	1	113	March 21, 2024
Unable to flatten sample/gene counts for table export Hail Query & hailctl	4	400	March 21, 2024
Arrangement of the scores output for hl.pca Hail Query & hailctl	4	67	March 18, 2024
How to add new columns in Hail table? Hail Query & hailctl	4	576	March 12, 2024
Slow Terra Output Hail Batch & General Cloud	2	105	March 11, 2024
MatrixTable.filter_rows produces error for data on Secure Lustre Hail Query & hailctl	6	395	March 11, 2024
Hailctl dataproc submit fails with 'no user project provided' Hail Query & hailctl	3	102	March 9, 2024
Using VCF non GT column Hail Query & hailctl	14	157	March 4, 2024
Most efficiently using cloud resources Hail Batch & General Cloud	3	105	March 1, 2024
When I try to create a Dataproc cluster I get PERMISSION_DENIED Hail Query & hailctl	1	74	February 28, 2024
Reading vcf non GT column Science	2	122	February 21, 2024

I cannot access the VEP, Annotation DB, or Datasets API buckets

Due to changes in the price of transferring data from a Google Cloud Storage multi-regional bucket to a regional bucket, we had to move our VEP reference data, Annotation DB datasets, and Datasets API datasets, into regi…